Hi mikel51,
I also have a similar problem, but not really related to the resolution, but with the DPI.
When your Mac is set to use "Best Retina", your Windows 7 VM will be set to 2880x1800 (2x your Mac resolution) and 199% DPI (done when "Optimize Windows for full resolution" is set).
It does look nice and sharp, bit Windows 7 has a bug with DPI higher than 189%. For instance the Windows explorer will show a tiny address bar and a huge search bar, and you can't resize it. For the interested ones, this is documented
here.
So, what I do is:
Under Hardware/Video, mark "Enable full Resolution", but leave "Optimize Windows for full resolution" unchecked.
Under Options/Full Screen, set "Scale to fit screen" to "Stretch".
Now under Windows, just set the resolution and dpi you want, and it will stick. Parallels will not modify it when you login.
@Parallels guys: it would be nice to set custom target resolution & dpi at the VM configuration.
Regarding your specific Quicken issue, try out checking/unchecking options like: "Disable display scaling on High DPI settings", in the compatibility settings of your program.
Hope it helps...
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